Scaffold Ga0114973_10000003

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000003
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 172746
• Total Scaffold Genes: 234
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (26.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014710	Metagenome / Metatranscriptome	260	Y
F016038	Metagenome / Metatranscriptome	250	Y
F016772	Metagenome / Metatranscriptome	244	Y
F032917	Metagenome / Metatranscriptome	178	Y
F052416	Metagenome / Metatranscriptome	142	Y
F053824	Metagenome / Metatranscriptome	140	Y
F065460	Metagenome / Metatranscriptome	127	Y
F076813	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_10000003123	F052416	GAG	MDLIEPKIIVSPISGQPVKPQLKTYIRDNKEIVEAHYIDPSSGSFIRKGVVSVRDLPQPEKK*
Ga0114973_10000003168	F065460	N/A	VSDFTKNYESILENYGCIKTTRREFYPKNFNLSEDFVNSFKKEYKRLVGEGVHPRRALQRINKALLFHARD*
Ga0114973_10000003187	F016038	N/A	MPANIDLLPTQKSLIDLSELPKNTFGSVFLGYNLKSLMDDILLVKFIDETEDGTSIMRNGLHVPINAELRAWRVGEVILAGPNTKNALPGNIVCFPNNLGIPIANIGVDGYGTLKKGIFLNEQRIFGICSVTNDNETVAANVKKSSAKQRSRN*
Ga0114973_1000000321	F053824	GGAG	MRHTKQMRGGNNMINYNSSDLRPKTFFAKIERSRNGEFTVKRVKVLNQKNQYARSISRVDAREFTRALNRAGRVNVA*
Ga0114973_10000003230	F014710	AGGAG	MTQTIDGTEYKVIPTQFKKKGFTYTQLKREGKKAIFQQTRAGSSLNNYEVVKIGRHNGYVMGGMAIEPAETYPGSSLWGITAWTCTSIDDAMRRYDALVS*
Ga0114973_10000003232	F076813	N/A	MKHKHEFDARGELRDIFAALAMQSLMNQGTPVPKWIAAQAYRYADAMLAQRDEISHNTTNKETLINE*
Ga0114973_1000000333	F032917	N/A	VTDEIASYDASTPNGYDIQNSGFIGFTDDGRGLVTAFGLLRYNTLIKAYKIRFKSFKGVDLNENAGITEYTDKLNNKLYIMDQQHLVYYAILNSWRKDGKEPDSIWDKAKDLVK*
Ga0114973_1000000335	F016772	AGG	MKHLLPFILIPLLVAGCATTGGNSNNDPAQAVENALPYIAPAVTLTCTVVLDQAVSSSDRADKARMINNVATIVEGLTRGAAPTPDQLQKALSDYLPVEKTHWAKYVVAIKDLYATQFNKVGGNAKLAVDVLNAIAKGCKDATESYVN*