Scaffold Ga0102830_1024772

Overview

Basic Information

• Taxon OID: 3300009059
• Scaffold ID: Ga0102830_1024772
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1872
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F006984	Metagenome / Metatranscriptome	360	Y
F019321	Metagenome / Metatranscriptome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102830_10247721	F019321	N/A	DIILEAYADSDDQETLQSIAEALGIELTKDVEFTATIEVSGTITLNLLEDYDLESEITDALYVDAQNGNIVIDEQEVCNVREAY*
Ga0102830_10247722	F000311	GAGG	MYFELTAPDRLSMERAYWDAQIMGLDPQAIAPLTFNIGTGSIEKVSRIRDKFNLKETYVSDYEPTGYTGR*
Ga0102830_10247726	F006984	AGGA	MPNWCYNTLTIQGPKSEVDMIKDRLNAPFTLAQETFGMGDISTMGFPTKIKLVEYSNPVFAFFNIHSYKDEGITDEEYACQPDRGGIDMKDPD