Scaffold Ga0102860_1127419

Overview

Basic Information

• Taxon OID: 3300009056
• Scaffold ID: Ga0102860_1127419
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 714
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage Mosig EXVC030M (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003514	Metagenome / Metatranscriptome	482	Y
F004191	Metagenome / Metatranscriptome	449	Y
F007551	Metagenome / Metatranscriptome	349	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102860_11274191	F004191	GGAG	MNKFKEIMATWFAVLGIFAIVGSVGAVETDQWMLAFTLFVIGTSTMFISIVCQEKQ*
Ga0102860_11274192	F007551	N/A	MSGETIMIKGEEGLITAILTQSVEDAKYTGFNKHDLKHKIEAINWIMGNDPQFNYYCKVINIEPSYIQNKIKTYNDTRITPQQKVLLKPIVESMLKQNNYKETNDATRI*
Ga0102860_11274193	F003514	AGGAG	MTPQEYNKLRTEELILKAAKSGGASKSEMIHGSLFVTFTSGFVDVLSQNLKYVLEKLLDKTIVKVYNTTN