Scaffold Ga0102860

Basic Information
Taxon OID	3300009056 Open in IMG/M
Scaffold ID	Ga0102860_1000953 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009056 Open in IMG/M

Scaffold ID

Ga0102860_1000953 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6352
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (53.85%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6352

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (53.85%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2327	Long. (^o)	-123.9168	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.2327

Long. (^o)

-123.9168

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018915	Metagenome / Metatranscriptome	232	Y
F028149	Metagenome / Metatranscriptome	192	N
F083941	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102860_100095310	F083941	N/A	MPEENLHNLEVRIVRLETIIGDKDAGMVSDIHGIKATLEGLKQFQWKLFGGLGVLVVLAQLIGRMTLK*
Ga0102860_100095312	F018915	GAG	VNWIYQLVKAFLDWIRETPAPTVEDGNAPKPLKNDLAARIADLPGLPDEGGPGPFR*
Ga0102860_10009533	F028149	AGGAG	MATGNVISCKQFASFLVSQEPVYDKEVLKDVRPFDGLIGYYNTGSFDAYSGTTHRFDRFNSVFPNVTGAWENSTGDSCVGQPCDPSENKIGWGYTRSTYSLEKQAWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGYTPSGISGGAFACKAGLPAISFSWVGAGYTTLRVLDSASAPIVYTTLGLLTPDILRSRVTRQYFLGAIQAGKEGYDSLQLHTDKETFRYLAKSNSQLTDSWRFGEFAPAAKEFYKYGFMGFVGDFMVKVLQFPLRFNAVSGTPGNYTLVLPYKNVAASEGIRSEFNGDYDRAQYQISYINNPRALRVLPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCSGRPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVNGACPVIIAGCAEDPGNPAQDYNSANAVCNPTLQFTAVANDAGQFVLGTTAIMCNDNIVTNAGISEATVAALVSSLQTVWDAEFGSAAGTWSVVSGNVIQLASSAFGTTTEVVPCTNVTLEFSI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102860_1000953

Overview

Ecosystem & Geography

Associated Families

Sequences