Scaffold Ga0102886_1023772

Overview

Basic Information

• Taxon OID: 3300009052
• Scaffold ID: Ga0102886_1023772
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1550A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2043
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2328
  • Long. (^o): -123.878

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003769	Metagenome / Metatranscriptome	469	Y
F069439	Metagenome / Metatranscriptome	124	N
F077379	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102886_10237721	F069439	AGGAG	MQKIQNTQFTISTNKMFNNSIFIKTNTKNNLTYMCSSIEKVALCLQAHNLKNATVKFASNFLINKNMLQT
Ga0102886_10237724	F077379	N/A	LEKSVLHYKNNNNLAGQNMLTQKALNKKLTATLCTTTNTIFVHKNNKAHLQYTVNSEKVIHNANAQQLQAFYKLPSTVMQKTKNFNKLINTNLLKQLFTTH*
Ga0102886_10237725	F003769	AGGGGG	MQQLKTLTVKTSNKVKSVHMETLYAVIENCYNSLQVIESDCTASNYFCASANIFAQLQYLYAENGCNDYVSLESVMDVFANNVTYYDEEYSLYESVVQNTAMQKIKLQDYACLSN*