Scaffold Ga0102886_1018050

Overview

Basic Information

• Taxon OID: 3300009052
• Scaffold ID: Ga0102886_1018050
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1550A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2401
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2328
  • Long. (^o): -123.878

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102886_10180502	F004606	GAG	MKAHRIFTKGQTVYCLLSSFSRPNVLLPIKGLIVDTQWDPINPLYQIRIIKMYDNMKYLKSNFFDMNFKYEFDNRARKMPIKKEDFKNISGLEERFNESDRERFYVIVESVMCKKTKNDLQGLFEKVQFYIISKNLKEIRDISSRPFFKGSLSTDSSQEFNIRFKKSWSDTFENRDIDIDKYLNSLS*
Ga0102886_10180503	F008190	N/A	METEIEFNFIYSKDAIKVKKFLGSVPRNIECISYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQTILGRNTTTSIFYVLGNLNKGTIISVKKYVESLTDRSIQYNIYHSPDINVNGTAELFKDAVEFE*