Scaffold Ga0102864_1009548

Overview

Basic Information

• Taxon OID: 3300009051
• Scaffold ID: Ga0102864_1009548
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2441
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022413	Metagenome / Metatranscriptome	214	N
F030431	Metagenome / Metatranscriptome	185	N
F043920	Metagenome / Metatranscriptome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102864_10095484	F043920	AGGAG	MRGSIIMLVSFLIVFGAVGGIEVNPDADLFTLMMIAIGGLIGMLIGVSIIREDA*
Ga0102864_10095485	F030431	GAGG	MSEIEIEINELLDTTVMLCEGIAAQVGCPVEWVEVIVEKRWNDTLFSDADFMNGYDMAKENV*
Ga0102864_10095488	F022413	AGGA	MLLAKPKLTNSLDSKQFKTFAECQEYLEAYTDTAMPLVEWIAIGKILVAETMTTPEFYPKKVKGQIVMTKFDIEEFA*