Scaffold Ga0102911_1046045

Overview

Basic Information

• Taxon OID: 3300009049
• Scaffold ID: Ga0102911_1046045
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1558A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1280
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2763
  • Long. (^o): -124.0055

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021979	Metagenome	216	Y
F027416	Metagenome	194	N
F054034	Metagenome	140	N
F084236	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102911_10460451	F027416	N/A	NIHKLEGCKVAAACMAWKVLRIKELDYNSENIYSIVLRTYPDNIHRIHLYLDRELKDGQYHLTSSKSDIMRVVERKDMVDVYNFLRLIKKEIERGLC*
Ga0102911_10460452	F084236	AGG	MLTINNQYKIVAETIVVSKNGINEHWIVDDVAETPDTYVMVVLRKMGIFDTLVRRIRIQREKNELGMYSVQIIQDGKIIDKDQIRLRNIQTAEGMLNELKTIMEFI*
Ga0102911_10460453	F054034	GGA	MLTIMTFKKLEGLVLMDGLNVESIFEFNERYSIWLSDGTNIEIDRDRHWKGGNYTYYKMYIGGGTPAMTEFIMIGTINTLDRMKKHLIYIHDKYKTK*
Ga0102911_10460454	F021979	AGG	MLTIENINILNSKFAGTPEWQVGEMFIGSQNYVFVIHKRVGEWTIYGVKHKELTVKLNRERTMYGYVMETGLVKQNYHGRSAHTIDSMRTIYGFTMCLDGHIKNVIK*