Scaffold Ga0102911_1028325

Overview

Basic Information

• Taxon OID: 3300009049
• Scaffold ID: Ga0102911_1028325
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1558A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1666
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2763
  • Long. (^o): -124.0055

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006870	Metagenome / Metatranscriptome	363	Y
F007087	Metagenome / Metatranscriptome	358	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102911_10283252	F006870	AGG	VQVTSKLKKTAKFFEPPLIAFLYLIYHMKKISLFFLLTLSLVVTSKASSLETKLSPQGSDKYYFHIKGDDKSSEKKLRDVFQNKVNEVCGTRFEIISITTYQINKEGVKNNVLDGSFKCFVNSQM*
Ga0102911_10283253	F007087	AGG	MKKLLLIALTIPNFVLADEIKLVCDGEESSYRNDVLEDTSKTSLKLQVRDDSIVIDSMTYKSKTFDYGAIKGSSKYVKEDNQIVLETTQVSNECDTALLNVKLNRSNGMIESTAKRIGACDGSSFTTSTKFKGKCK*