Scaffold Ga0105152_10057488

Overview

Basic Information

• Taxon OID: 3300009039
• Scaffold ID: Ga0105152_10057488
• Source Dataset Name: Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1559
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Russia: Lake Baikal
• Coordinates
  • Lat. (^o): 53.7598
  • Long. (^o): 107.9791
  • Depth (m): 0 to .05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029433	Metagenome	188	Y
F092026	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105152_100574883	F029433	GAG	MTDYLVTSNRLNGHSRGDIIKAADLGDLTTDLLFLVESGHLSPLKATKSAKPIDTEQQE*
Ga0105152_100574885	F092026	GAGG	MKVKLSVDLHNGTPPIEVVTNMYVVCEWEKLENRKVSDGKGIGYSDLCCWAYLILQVRGDSLPATWRQWVKANPDMEVAAIDETNPNPTALVLTEGN*