Scaffold Ga0099829_10018396

Overview

Basic Information

• Taxon OID: 3300009038
• Scaffold ID: Ga0099829_10018396
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4739
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004205	Metagenome / Metatranscriptome	448	Y
F006201	Metagenome / Metatranscriptome	379	Y
F052533	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099829_100183961	F052533	AGGAG	VHEWIRTQVRQRPGCQDFSQEFRLLGNGPNWECIPTNCYDWDRASLEAFDQVVGDARRRFELQG*
Ga0099829_100183962	F004205	GGAGG	MEARVTSQSQSFRLRERMEEANISHGQEIRADLPNIRVLALAGSGKGQALFCAMGPIRVREILNQGDDCPLPTDVTLEGLQVFSSGTYDVLNALVSSNGNLRLVVDGQTRVVPGARVVGVGQASAEV*
Ga0099829_100183963	F006201	AGGAGG	MNPIQKTLLTTAFEALGPERVTRGLKATGHSWRDCFFSRAMYGEPDALARELEKRWRKEHFVSTLLGVRVQAVNEVVRAWDHNEGAFRALAAEWLELNRAAAVPPAVVGT*