NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099829_10010393

Scaffold Ga0099829_10010393


Overview

Basic Information
Taxon OID3300009038 Open in IMG/M
Scaffold IDGa0099829_10010393 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6015
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium GWC2_70_16(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013805Metagenome268Y
F025584Metagenome / Metatranscriptome201Y
F035065Metagenome / Metatranscriptome173Y
F037102Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0099829_100103931F037102N/AMPEEARMNELAPALTRQVLQSAMHQKILLRAAELVAMGWTRGTAARDATGQKVRSTAPQTTAWCVVGAVDRALYELLHLDVYDLLGLEVDAYDTAPCPFEVLRALRRPLQRVLGRSDLAHWNDHVCPAPAAAERLLREAAASIPRIGGITPSQ*
Ga0099829_100103932F035065GGAGGMTDREVEAILDFLRHFGSFGCRQICVRRTEPTPRTPEDVGHFVLETLATWRAEGLDAERLYKVATIAIHFDAYKLPGIICMPACCRPWGAVEPACPPGPGRPLTGAQLQQALLRAVPIGPPPAPDAPLPDDLDEDLKRTGLSP*
Ga0099829_100103933F025584GAGGVGDPRLDELRRWGVFWIHHEAEELRVHHRTTIPPEDARALVMTLLASGRVPPLQATLVDLEYTAARPVLQRFWGTACRRDEVVYLILFINDRCLVLALSR*
Ga0099829_100103937F013805AGGAMAEAATGFLHVVRIGGDIDPVNAEYRIAFAPLDGRLRGRQARCEGLDALTDFLRQARVPIPEIERTWRTLARRRVHSIPHIALTPAQLEALGL*

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