Basic Information | |
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Taxon OID | 3300009038 Open in IMG/M |
Scaffold ID | Ga0099829_10007296 Open in IMG/M |
Source Dataset Name | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6907 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (18.18%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California, Eel River Critical Zone Observatory | |||||||
Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011251 | Metagenome / Metatranscriptome | 293 | Y |
F017017 | Metagenome / Metatranscriptome | 243 | Y |
F019520 | Metagenome / Metatranscriptome | 229 | Y |
F024902 | Metagenome | 204 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0099829_1000729610 | F017017 | N/A | MLKIGQLAQIKGESPYVYEALTQIVNAVNSLGRATGVDPSGTIDPPAPIGSLSVLAAGGIFDLAITDNSSVHRGIFYFAESDLTPAFSRPRVHFLGSSRNLRLALGNQTLYWRAYSQYLGSDPSKPVTFGTPATAVTGGGTSPGPQLQPSTGSGTAPGTAGGSGFGRLTESVSGPVILR* |
Ga0099829_1000729611 | F024902 | N/A | PSSKDLELPINLLGERVAFQVGTNAQGAWFRLERFIPSLLPDPWAPVRGGN* |
Ga0099829_100072967 | F011251 | N/A | MNPYWIVVGLTSLVQFFIFLRWLHRRTRDDEIRTAFVRDMAVNHLPHLYHALRQIAGHLGIELRDPPPVQFMELNSQDRKR* |
Ga0099829_100072969 | F019520 | N/A | VLKSVPVRIREYTPSDLDALRRMHATQGFGYPLPDLESPLFLSKLVLEDDGEDNDSGRKEADRNSPRVDGSHVTMSILQRLTAETYLLHDPGAGTPRRRWQSFLALHEAARSAAIARGLDDVQAFLPPAIARAFGRRLARLGWTQDPWPCFSRRIP* |
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