 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009038 Open in IMG/M |
| Scaffold ID | Ga0099829_10001611 Open in IMG/M |
| Source Dataset Name | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12600 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (80.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California, Eel River Critical Zone Observatory | |||||||
| Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F024073 | Metagenome / Metatranscriptome | 207 | N |
| F030039 | Metagenome / Metatranscriptome | 186 | N |
| F051819 | Metagenome | 143 | N |
| F104817 | Metagenome / Metatranscriptome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0099829_1000161111 | F030039 | GGCGG | VVRRFYDFLARGRLVDALNLFTTDARLRDASGRESDGIRAITSSLLTYRVPQDIAVEQMEPEDGEIRATVRSPSGRSIGRFSVARGRIKSLRMERA* |
| Ga0099829_100016112 | F051819 | GAG | MPSPLVNRYAIYFELPDHGKVPQSIAREPSLLMAVENCLNTYQATGHTGFLIDDTRAHREFHVQRDVLLQLVFLRHQDRTRYFEILNRLDRQGGQDELVSFLAAHARM* |
| Ga0099829_100016116 | F104817 | GGCGG | MLATVTGLWFPGVKLPQFDFNTLNGRLALGDLSFPASSTTFIVGGIIHMTDGIIWALIFGLIISPVLGVVIKPLRPMTPTVNLMKGIIWGGALWIISSALWMPLLIGAFLGPTLTGPFGLPCGVGPFLTCFGPYGVQALFTNLFWHMIWGVNLGLLFNPMRAAGRVRW* |
| Ga0099829_100016119 | F024073 | GAG | MADLWVVVGFLAFFGTITGLLTITFLAFTRMDKDVRRARMFIMEKRIQRFLGSFTVAFIALTVLICASMIAVGLPVAIGTGLLVLWLGGMGYGTYELFLIVRPPKGTLLRLIKKSNTGRSVLLEKAAILDRSGRDRDAAK* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |