Scaffold Ga0099829_10000743

Overview

Basic Information

• Taxon OID: 3300009038
• Scaffold ID: Ga0099829_10000743
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17223
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (42.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002008	Metagenome / Metatranscriptome	604	Y
F017117	Metagenome / Metatranscriptome	242	Y
F024527	Metagenome / Metatranscriptome	205	N
F028139	Metagenome / Metatranscriptome	192	N
F057257	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099829_1000074317	F024527	GAG	MRSCYSPHPGYQLFAHTSPDKALEGEKVFDEDRITGLLRRSLELGHYDILEHNSITWLVDASEKDILSLLDSSKFFETSRVDEEKWIVTTNLRVLVELARAQSPPPLSKELVATLITAAPSIASTLAATVKS*
Ga0099829_100007432	F028139	N/A	VGVSYNLPPDAEYSLLQLILYVLSFVTVILIFLYIASERPGEKKKKEEEED*
Ga0099829_100007433	F017117	GAG	LVDISDPTVWSTIVQTIVLSLTLVIFTLSFRSQNKAIQEQAYQKVMDDYGDAMRMLSERPELYAFQLELFNISGRPFGREQKSYSREEMVIRNYVIMLYGFFERVYFLYRRKWIDEDTWRQWAAFLEVVAAHPVFKDVHLSSREMFDKPFQDYVSGILKRKN*
Ga0099829_100007437	F057257	AGGAG	VDSSDSSPRSSASGRAEVYRPEEQVAGLASVFLSRGHSFGYGLYFSKTRIIGVRKRRTSLVFGLALGVPVLALLLYLLYLDFVLRFSGPLYGVFLLPILPIVVDLGVRRLRHAVPERIVQENTPTTTSELGSKIDFELKREEIAELLMKHVIGGWLFPQPGYLRITSKSHLEKPIEIKIHGIKQFQTLREIVIEFAARQPQVRALEY*
Ga0099829_100007439	F002008	N/A	MGATNHNRQEESLETTDKKILKTCLVCKRTFLGWFSEKYCSADCRMEGNRLKARLRKRKSRKVGDLKEGVISQQLGELGLAETQYPMYNHEIVPTMYANFNFYHARDGKRHVRSYYDLLRDIAKLNGTDLRTILANMSPRDEKN*