Scaffold Ga0099829_10000620

Overview

Basic Information

• Taxon OID: 3300009038
• Scaffold ID: Ga0099829_10000620
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18671
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (59.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004152	Metagenome	450	Y
F009674	Metagenome / Metatranscriptome	314	Y
F027476	Metagenome / Metatranscriptome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099829_1000062013	F009674	N/A	MLRLHFDDATIVFHVKSAKIRNAQKILDSVLAEAKQEAIARLSSRNRYVD*
Ga0099829_1000062014	F027476	GGAGG	MVGWGFAFGRGFVVLLWSIVWAIVAGIVGVLVIGGSLASLVSNPTAVASNPTGLVTGFLAASFLGIFLIIFIAVIGLYATIVKVAVDGALSQLEKSGQYSRGSYSTGSQSMGSQPTLVAPAMRKFCANCGNALPGGMAKCSNCGATL*
Ga0099829_1000062022	F004152	GGA	MTRIVADDLQDEEVFPLVEYMTAMSGGQISQHKKILEVTGLTNKKIKFLLHKFLYTRRLPGYGVLDTAGNFEIVHLKPEEKRKEQPETLSPTMLPGSIGLGGIPRWGKPSDMIEWEGQPPPPKKERYKKR*