NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099829_10000301

Scaffold Ga0099829_10000301


Overview

Basic Information
Taxon OID3300009038 Open in IMG/M
Scaffold IDGa0099829_10000301 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25585
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (32.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009132Metagenome / Metatranscriptome322N
F018143Metagenome / Metatranscriptome236N
F031428Metagenome182N
F032621Metagenome179N
F065609Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0099829_1000030115F031428N/AMRKMLEPFSTGPVAMSAVRFGDSDLAKILRGVLVIVAAGLMILPAYLNYEIWKTGFNPVVSMAISLQLFAIGIVLFILAVGKERRAPKSQPQ*
Ga0099829_1000030117F009132N/AMVKRKIVDSSPEDLSNLQRLVGPENVLAHCAGVNYQVYVTDTRLLVGKRFATGEKFMNVPTASINTLELITKSLLPPLTFAVLGAIASFLIWWFPGTRMLPLPVFPYDVAMLAGLVFFVGSLIVAWWRVGIAVLRIRVNDSQDPITVKLVSTSKAEAVFKALKG*
Ga0099829_1000030122F032621N/ALSSAGSNVAVQTSKEVYIGRLPPASLVYWIRLGFGVLAGVIFNLAGFGSLGVGLGTLTMITVGIGVYSVSVFLVKNLLGYGPEVLKGPNKHVTIGMGSYIIWMIFTTILLYTVLNPHPS*
Ga0099829_100003015F065609GGAGGMKNVKPGDRVWVKTPRAIVERKVGTIVAAKKTPNGVRYVVEWEVDLLELPNGHHPGYLANEIVPIS*
Ga0099829_100003016F018143N/AMREKAFAVISFEAQNRGVTVQELLRAVIVPEWARENVQASTTPRTMMQITPDQTKPSMSARQRDSKLAITVGQLRT*
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