Scaffold Ga0099829_10000128

Overview

Basic Information

• Taxon OID: 3300009038
• Scaffold ID: Ga0099829_10000128
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37022
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (51.11%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002266	Metagenome / Metatranscriptome	576	Y
F005236	Metagenome / Metatranscriptome	407	Y
F007071	Metagenome / Metatranscriptome	358	Y
F007642	Metagenome	347	Y
F008127	Metagenome	338	N
F015713	Metagenome	252	N
F023303	Metagenome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099829_1000012810	F023303	N/A	LSFGQKKFPLNSGLFLVIALVGTLAATIISFSLIVLGRGGPSLAAYGIGSMSLFAFLLTIQVLHGKSESKDDFVKKGAVRTAIATSFTVAYLMLLALSLDPGMWLNLNNGILANFHLVYIFTIGTYFVTASLERIVDLAKGKSLLFG*
Ga0099829_1000012816	F005236	GAG	VTEQIGKSMGFLSIMGKILIGLAMLTLPVAVSLILVFSENLTTIGVAISLGASVFVFFCGIYAGFLGIKYERLQQQFESFVNPLKIRPNAVNLIKAICPIDHEQVVFVHVSPHRDDARPDGLDIFLGSCGHEVHRGEIELEQPAESA*
Ga0099829_1000012818	F002266	N/A	LKTQGEIIEFVHDKGLVSTLGGSELPSFISGILGKPWKPSAKGFSGWLDWWSIKISGQPVAQVSRDVEGRKDILATRIFRRTKTFVSNKLWPILDIIVKHHQDPAVKQQILSDIELKILETIETEGTIRTDRLRKKLKLEAKENSSKFHRSLTNLESYALIVGVEDPHPEKHLHANIWQTWDTRTREGKGRNSLSYSEALGKLLVKTIDSCVLAREDQIPKWFEWSNDMKQAKEKLLSDGAVLRSGPYLVSSKVRDANN*
Ga0099829_1000012824	F015713	GAG	MKISWHDIAEDVEKHAHKLAEDIFALEPDVTEEVDLKALFERILGKEDWTDKLAAQLGRFKGLFHRPQKETELPEDLKQLIPDMRDVERAYVDITSGYKDFIKAVWVAQHERQWRE*
Ga0099829_1000012828	F007071	N/A	MSGLSLRLTEIRSFLLPVSQFVAWPIFFLLTSAISQQPAYFLALLLVLAADVIDKSPRNRGLFRDLVAGGATTVLALFLNDLNGVVIGAMVSVAATFRVVQKLN*
Ga0099829_1000012831	F008127	GAG	MSDDFLPRAHSKRLGELERSNWKSLRDGRNIHRIDPAIREIVTLLNRKGYRTFSSCSGGHPANPRWKVNRHESGYLAFSPPSNVAFILYLGLRKKNRDFTVEAQAVIDDGDGGDRETVCSRFYWQLSDRKKHKLEHYHKLFSQMSEIVEGLPRAPGNGNEVLAGLFGKGNLQTGLRIVKGQMKRFTAN*
Ga0099829_1000012832	F007642	N/A	MPSLTAREAVTIPEKPLAEVLVEGELSPFEHETLYRVLRKGFRLEHPSYTELLDEDLATRINITFHHPYASTIFTDVLQENWRVLKELLKQVRYRRGKAGAAVTLSFVGEENTLVFKSGVLEEKELSSALDQIGHLTGILGQMLRPETMEKPLLLVEVAYDKKSDRWHEFRGFTSTSRNEGYVFDESVFRWIRL*