Scaffold Ga0099829_10000121

Overview

Basic Information

• Taxon OID: 3300009038
• Scaffold ID: Ga0099829_10000121
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37836
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (44.19%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002514	Metagenome / Metatranscriptome	552	Y
F005811	Metagenome / Metatranscriptome	389	N
F008234	Metagenome	336	Y
F020515	Metagenome	223	Y
F042817	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099829_1000012114	F042817	GGA	VVNQSVTSALAAEALVAPMKCIVVDAAKALTAAVAEFRRPLSATVARRHCLVERAEPTSLHLFTSLSLQALMSTMLMGWTAQSGRLMRWVWMSTRSSVRIRMGRTRVMLWIGVRVTLGLRLRFHVDSSRKKSRPVIVYF*
Ga0099829_1000012116	F005811	GGAGG	MIRPENRRQWVPKTAELTLAAGLAATYIITTFIPLTPFIGGPGFITLEIVMLPIIAALLRPIAALATVFIGSLGMALGQPSFYQVFGLPGLLIPLVAVGGGSIAFHYRLGAIVPWAYVLAGAVYYVALSKGGTLFWLVPYLLVIISLPAAFRLKNNARIGLLTFYIAMTEQVTLNILSISILSLTGPVWSVITPLMYLERSIATLGGAAGIVALKSGLGGRLDLIERSPREVRQ*
Ga0099829_1000012122	F020515	AGG	MTVATMQKDVRPCEALCPKHGVKCKLKMFEQDAYPMHAHLIDQKMCVWKK*
Ga0099829_1000012123	F002514	GAG	MNLLDQLELYTLDDARKETSQIDYWLFVYKSMKSGLLMTKNMEKHLRFKLKGLGVQV*
Ga0099829_1000012142	F008234	N/A	MTELYLSFLLMYHGALTMLLGAYGVLPPYFGTSRLLANIVGLDLNSHPNPLVTASFGLPFYLGFLSIGLITTSLIVNGFVERRKTRERRGVGAIFTNDS*