Scaffold Ga0099829_10000008

Overview

Basic Information

• Taxon OID: 3300009038
• Scaffold ID: Ga0099829_10000008
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 100492
• Total Scaffold Genes: 101
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (62.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076399	Metagenome	118	N
F086988	Metagenome / Metatranscriptome	110	N
F096803	Metagenome	104	Y
F098968	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099829_1000000819	F086988	N/A	MRVTQRVTGGSSMFTSEQVKQAFGTAQAKAAAKAKEFEAEARKVLEALGDRAQAELKVLISTARSDTRDRIAELGAELEKLGRKVQELARTPAAASKDSQAAESGPNGAQPPVN*
Ga0099829_1000000839	F098968	N/A	MRILLVAAFTAFAAGAQERQLIDEVVAVVDAHSVTLSELAAETRIHLVEQQGPQTASAQLDRAILAASLRRLVQERVVLSEVERLKLFDLDHAEVDAALARLRARFATAAAWESFTRQVELTDDEIGAVLARELRVARYLDNRLKLAAQLRDSELEEAWKAQGAQGDRELLRQRLSKEKYERLLTELLGGLRRKATVRIVDPLEDANRSIAEGRR*
Ga0099829_1000000844	F076399	N/A	MIARLREDVDRCSMRVLLVTGISIALASPAALARVSREQGRAPRPPPRLQAPRMWTEHSGAFSIERPDGDRWSFKGNARGPDGERLPLVARAPEAGAQLIVQNADGISSLRQLARLLADHLQTEQGVHVEDVNRLPARGGEAYGFTFSVSDEARGRVAVVRAGEHVALVIASWPMGAPPVVAEDVEAMIGSLGPPPDALPPGVF*
Ga0099829_1000000851	F096803	GGCGG	VPALRILGAVAALLAAAVVVFAVLRARRLRRRHRAAFGVPLPALDPDRERLLDAPRALYHGTRFADGAAVLAPRWAGPCVGDLWCTDEAIFLQREAGGGRLSWPLRWIEDASLLRAHAELAGKDLPMLRIRFRRGGQELVSDFSLPGGMASLEKLRREVHLRQGTHDALGALGELLAREPVPGSGPPR*