NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114950_11238148

Scaffold Ga0114950_11238148


Overview

Basic Information
Taxon OID3300009030 Open in IMG/M
Scaffold IDGa0114950_11238148 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N075 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)580
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKermadec Trench
CoordinatesLat. (o)-32.8507Long. (o)-177.6629Alt. (m)Depth (m)9177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078823Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0114950_112381481F078823GGAGMTETLNERPDIEELHESVMEIINDYIDFEYSFTDGGRDFSCCETEGNADEGDDLEILTMWEGDGLFEVTIERGYKQRGQEDDGEYIYDMNYQGTEIEGDYNAYVTWLNKEWPGVYEEAIAEWKMADADKITDEDKAVIENG*

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