NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114950_10009227

Scaffold Ga0114950_10009227


Overview

Basic Information
Taxon OID3300009030 Open in IMG/M
Scaffold IDGa0114950_10009227 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N075 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7671
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKermadec Trench
CoordinatesLat. (o)-32.8507Long. (o)-177.6629Alt. (m)Depth (m)9177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099846Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0114950_100092274F099846GGAGMANYLGLQTIDELVNYTYNRTPDEIMKAGFTTGDPGAGGNYNPLFGAMAWANFNLEANIFAALPKYVWDFSGWRIFADKAPLITTTLDGSTIVGQIDPKGGTLEGGFIANAVKPDVEEVTVKPKTLQYVFEASELLEQLVDNSRDDNYGSLAQQRVYASDQFKERVNLMLTEIPTDVTATEVSHRFNLESLDRIVASFAEYTFEDHATVANNYNPWFDANGDGIDRTVDKYDATVVSPSGTIGTADVITDAIIRDVLAKVRIAGGKEPTVMIGGQDTYSEIQSIYMNAYRIQNTADLRTEFSVGVNGVDTFTGTGAGLHLSTIYGLPFIPSKDTTQSAEGSVDDLFILNTSADKNAPNKPLIGLQVLKPIVYYEAGKRQQGYPFINESYNDRALYNMLAETTCRNFKAQAKVRDIASGI*

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