Scaffold Ga0103708_100085996

Overview

Basic Information

• Taxon OID: 3300009028
• Scaffold ID: Ga0103708_100085996
• Source Dataset Name: Eukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_S3
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Woods Hole Oceanographic Institution
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 763
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Eukaryotic Communities From Seawater Of The North Pacific Subtropical Gyre

Source Dataset Sampling Location

• Location Name: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025753	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103708_1000859961	F025753	GGCGG	VNSVGPPINKPGGAQAGPFGYTDKGTYFEDSHFQGFPERIEIIYQGFVWAMEMFYPGQDSILHGGVHTILKDKVKYETVNLEGDYIVRVSGRASPYNINRLTFYTKNGKQFGPWGDRHSEESVDFDVSAPPGHALAFFSGTIDFGVPLRSISFHWRPIS*