Scaffold Ga0102957_1169222

Overview

Basic Information

• Taxon OID: 3300009027
• Scaffold ID: Ga0102957_1169222
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 778
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4971
  • Long. (^o): -122.129
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F006094	Metagenome / Metatranscriptome	382	Y
F024295	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102957_11692221	F024295	AGGAG	MKYIVELLLTYEVDAPDMRQAQITAYKRAIDLCDSEDDLFKHIDKDMKCVSSMVRDVSVIEEEIDT*
Ga0102957_11692222	F006094	AGGAG	MLLHEFYSDDDCSRGDTSYRKSCVFKEPDGSYTIVLIQDGAIVEELNLLGHSEQYAEDTAEDWVIGVRQ*
Ga0102957_11692223	F002430	AGGAG	MMTLKLPKKQVNAILVALDTEIDYTFDTHGRPDWETFPEFAAMLMAYYTTRCKFEEENEDAVA*