NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102957_1056095

Scaffold Ga0102957_1056095


Overview

Basic Information
Taxon OID3300009027 Open in IMG/M
Scaffold IDGa0102957_1056095 Open in IMG/M
Source Dataset NameSalt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1352
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location NameSouth San Francisco, USA
CoordinatesLat. (o)37.4971Long. (o)-122.129Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089516Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0102957_10560953F089516N/AVREANRTVARNALALGGKISVEDRCKGAEIRKFISSRLMVTAITKDLNDFQQNLSRAVELDEFVVPQDRMLIGIVNSQIGQYERAMKEEQLTKDYVYGTYGKIKERLDVELKPVSRFWLTDWGTFRYNAITKDGYKTSFYYRDKLEIGDAVKVRGTVSKHTNDTTTINRVKVL*

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