Scaffold Ga0102957_1004632

Overview

Basic Information

• Taxon OID: 3300009027
• Scaffold ID: Ga0102957_1004632
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4654
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4971
  • Long. (^o): -122.129
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006959	Metagenome / Metatranscriptome	361	Y
F008851	Metagenome / Metatranscriptome	327	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102957_10046325	F008851	AGGAG	MNKYKMIENYSSTEGTLYTGEVLKEDNNNTLEGHKRLRDSMGRVWFVPHKYIVKI*
Ga0102957_10046328	F006959	AGCAGG	MYYEVQVVFTEEIPTKNGFREKKSRKTFLVECVSLSIAETKVNEFLKDSPFEFEVKLAKESKIVGVIEND*