Scaffold Ga0102829_1086172

Overview

Basic Information

• Taxon OID: 3300009026
• Scaffold ID: Ga0102829_1086172
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 970
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002249	Metagenome	578	Y
F094103	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102829_10861722	F094103	AGGAG	MDKLFTQDLIDVDKMYLQIKNNAYSRDELIDIMKECNWIWKKRMKVKEIGWTEYNDVGRKIEESLRANRKIEAIKLYRAYKTDNGEDCSLREAKEYIDKLQIKMGLD*
Ga0102829_10861723	F002249	AGG	MSKFKTWQEKDANRYSSYPYKVPVNHKALQYTRIKELQVRMMRWSAWVKDECIPNKELDKDKWQHRFSFTLRCEKRAGELNKEELKMLNRLWQLYDKPADT*