Scaffold Ga0102829_1043975

Overview

Basic Information

• Taxon OID: 3300009026
• Scaffold ID: Ga0102829_1043975
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1330
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F098687	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102829_10439751	F098687	N/A	ATFEMVSGSIENDCHYEFTCEDGKFEETCSYETFKEAVMDGKWGGMAEWEMLFEESEEIEG*
Ga0102829_10439752	F002406	N/A	MENLKWIRAMSDRLRDELSGEYDDETKDLIIRAFMQGLYQQPAIVEELKSSSLIESNYFEDEG*
Ga0102829_10439756	F002398	GGA	MIPFFLILSSLNSINNFVPLKTYISENAKIHCYVYFINEDIPDFPRVNILEKNKKDFFDYLDTIGIEHTKVGSYYFFNRKNK*