Scaffold Ga0102829

Basic Information
Taxon OID	3300009026 Open in IMG/M
Scaffold ID	Ga0102829_1005775 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009026 Open in IMG/M

Scaffold ID

Ga0102829_1005775 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3380
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (10.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3380

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (10.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2	Long. (^o)	-123.94	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.2

Long. (^o)

-123.94

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013879	Metagenome / Metatranscriptome	267	N
F017997	Metagenome / Metatranscriptome	237	Y
F031459	Metagenome / Metatranscriptome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102829_10057752	F002843	N/A	MIVPVDIVAVQCNQNNSLFVTTGIDYDSDGAVVGSEITSQYTLNPGDSLEGQPTEVVNIANALWTPAVVAAYKLANPVVEAVQTNE*
Ga0102829_10057753	F031459	N/A	MQTDTNNSSGVGISLATAAAAGAVSFLPQLTQWFQLGAAVLAFVAASIGLYKTFKK*
Ga0102829_10057755	F017997	N/A	VNFIEQIVTALLKWLTGFVQTPPTVEDAKRDPDLKKKLLDRIAKSNR*
Ga0102829_10057757	F007260	N/A	MSVLQGAMGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGVNADRLLQESGSLLLQENTDRLLLTFGKMIPVVGRLLTYDGRQMRIMSAKRDGSGAYYALELGSKTK*
Ga0102829_10057758	F013879	N/A	MTPTVTVDTSRFDAAWKEYLPKTKRSLADAVNARTFFLMLRLYCLLPPKSPQAARNKILDYFNRPVGADRFDKKTGKRVGKSRQLRVVHLIAQAKNAKEGKPGLYGQDMRNAAGKLRRRAAGSVGYLKSAVTKAIKKLSPSFQQFGGTRRAKKGSAGVKSVAGNQALINLANQYGLPQENVAMHRGSSAYAFNAKAGFNPSSHVRLNIGLADNQVGTVEGIYAKAMQQAYNDEARELENHIASALQAAFDGSESKGITVT*
Ga0102829_10057759	F010835	AGGA	MNAVALRTERALVDWLAAEDWSESPIGTPTCLTSYGHGAFADPDLEDQMPSFPRIVVRASTAVPVHPLDRTCEIDITATLQLSADDTSEAQALAIVQIFENLLQYLYVDGNIAELDALDTDPSGGFNAQFAVPVDFGINDISERARTFSRSMTIFAAANTI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102829_1005775

Overview

Ecosystem & Geography

Associated Families

Sequences