Scaffold Ga0102829_1003721

Overview

Basic Information

• Taxon OID: 3300009026
• Scaffold ID: Ga0102829_1003721
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4190
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009267	Metagenome / Metatranscriptome	320	N
F011222	Metagenome / Metatranscriptome	293	N
F023103	Metagenome	211	N
F046247	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102829_10037212	F046247	N/A	MIISPNDQGWAFDESTAWKLVYDGITIIFFDETEKAISTQSVLFVGTKDECDAEIARLGIVDVTAQVNDNGLDLHADA*
Ga0102829_10037215	F011222	GGTGG	MGFKMNFPPVTRLVRTDGKESTEFWFEGENAKGQDASQVYRQMTKEGDELEATDPENPLCYIRAALANRDVLVDIIRNTPRLIEVEHNGKRIAISENASDKTKQEMTRFLK*
Ga0102829_10037216	F009267	N/A	MKKNRDNDLEKDDEIIRIQAMEDGPKIVNGRILRPITALTISWMQRNEVFSGTMDLVWKSAAFAYLHSEPYSSIRSVVNDRSAFINAVDSWIENTMIHHLEISAMTDAMNAAFELYNASATQSKEGSGSGN*
Ga0102829_10037218	F023103	GAG	MKDYAEIREVTIPDAVSLNARLLCVELARRTQPFGEEQTSGTIRVKNDIGKIIKNTEQLDAYADRVGSQRIKARLKALIKSGRFDIVETILRNIGFLNKWTGMEVISASKMKSVHNEARNKTTGRTKSRGSKLFIASVSEQETYISEVQKRVGISKGGWADCATQLKKVNKGSLLSNFPKWVIKAMRSGSGKVKDMTSDLKNPRVEMTNDIPWA