Scaffold Ga0102829_1002159

Overview

Basic Information

• Taxon OID: 3300009026
• Scaffold ID: Ga0102829_1002159
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5455
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006182	Metagenome	379	Y
F027179	Metagenome	195	Y
F060914	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102829_100215913	F006182	GAGG	VKVNFKVTGTMEIPDDVIYHYDVAGKLYALEFNEIMYMLQMCIVAEGGAWGHETITDHQDMENHSITNVRYDDAEFVAI*
Ga0102829_10021597	F060914	AGCAG	LKRLIKVRSDISASIYPIQLYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNAKIIQSINELKAQGIL*
Ga0102829_10021598	F027179	N/A	MADGLFLYEKENSYVVMDQNDNILKEAKTSATCSSYILKTLQSRRAAERYAIEEIN*