Scaffold Ga0102829_1000190

Overview

Basic Information

• Taxon OID: 3300009026
• Scaffold ID: Ga0102829_1000190
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19559
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (31.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050364	Metagenome / Metatranscriptome	145	Y
F060915	Metagenome / Metatranscriptome	132	Y
F064721	Metagenome / Metatranscriptome	128	N
F071252	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102829_100019013	F064721	N/A	VIVLLIKKKINMTLKQKIVSIVIVGGLFRISEFIANIIMWLMRLFKTRKPHYLYICLKYEQDFIYPLAEKICYCLGLKKEWDVHQESLDRLEKLIFGEDANKD*
Ga0102829_100019019	F060915	N/A	MNKTNLNWKKKWLDDKSGYWYSAKVPIIGWEYIVDAHYDLGTDCGFIGGLYFSKFDDEITRVTNKFYKTEEAAMIACEKHLINTAEKFNNWINCEQK*
Ga0102829_10001907	F071252	N/A	MSNKYEKFTKKALDKMFTYVGFEGFNEEFTKQHEDWYQQKTWTMEQSADFKKWFITETKKDLKFNKSMAEREFSWFDLKWGWKVSDDPYFSKQKELVHD*
Ga0102829_10001908	F050364	GGA	MRADYKNTKIGDKIVFKQSTKHWFLNREENAKKLEAGKTYTVKEISVASSSTGVKLEETEELEYELCWFDKNETEESQRIHSRQMGCS*