Scaffold Ga0102811_1070940

Overview

Basic Information

• Taxon OID: 3300009024
• Scaffold ID: Ga0102811_1070940
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1308
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013084	Metagenome	274	Y
F018927	Metagenome	232	Y
F043399	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102811_10709402	F013084	N/A	MGILSILGLMEETKNTVLHRGHNVKNWLVLGNDCYALECIDCKMTCMIKEKPLPNEIKASGEALALNCVKPVKEKKLRKR*
Ga0102811_10709403	F018927	N/A	MDKHITICRHLDVCGTTTYYVIEKSKNSSSIIWNGTCKQAAYQVAYRNARKENTPLYDTVYKAQVDRNGVKHIIPVGNELLEVN*
Ga0102811_10709404	F043399	AGGA	MKIPPSSDMLLDDYTMVIWTIVKKNNNYILLDSCGVEVFRRKENRKKEIYQYCEDNGIDVQVEF*