Scaffold Ga0103928_10031512

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103928_10031512

Scaffold Ga0103928_10031512

Overview

Basic Information
Taxon OID	3300009023 Open in IMG/M
Scaffold ID	Ga0103928_10031512 Open in IMG/M
Source Dataset Name	Planktonic microbial communities from coastal waters of California, USA - Canon-29
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1396
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031743	Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103928_100315121	F031743	N/A	MTAVEHSAQQDVLQYVLPVFAVTTVLAAPFVTFKALGRGTVIEELKAATGRRLSLISLAITLLSPMFLISNYTQMALAQYAVYSMLLSQANLLIDRMAKRRALPPLLVWHSVNLLNLIGGTFSSVLQIYSTSNVGLIMTIYNISPGGDCPDDDAAVNYCSDGWIAVQLLTGFLYLVLHILAFFVVIMRVVHSYGGEDEKPIDGVTSMP*

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