Scaffold Ga0103706_10023877

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103706_10023877

Scaffold Ga0103706_10023877

Overview

Basic Information
Taxon OID	3300009022 Open in IMG/M
Scaffold ID	Ga0103706_10023877 Open in IMG/M
Source Dataset Name	Eukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_S1
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Woods Hole Oceanographic Institution
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1140
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Eukaryotic Communities From Seawater Of The North Pacific Subtropical Gyre

Source Dataset Sampling Location
Location Name	North Pacific Subtropical Gyre
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014356	Metatranscriptome	263	N
F035620	Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103706_100238771	F035620	N/A	MVGSCLVVYKRRLSMCNMLVVDCSYRSCMVDLLVVMVGSDRGSDDGSLVASVAVADTGERASHSMGCVEVALRAGQGSQGGADKQDRLMTEHGCPSSNLN
Ga0103706_100238772	F014356	GAGG	VPTLETKCDQEDGGQALELRTEEECQDVVRTVCVERHNVVDNEVCAYSYTLHPVPTEAKLVEPHWSEVCHQETICLNPHHAKPSYGAPPAYCHEEIHETCALEPVLEPVVRPVTVSLPQPVEVCINKQIVLPYLECEKVKDRHCMVVPRAGKGYKYQIDKCTVEQGEPACQETLLQLPQQACLQKIERVNTVYTAPEKVSYSG*

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