Scaffold Ga0103706_10000075

Overview

Basic Information

• Taxon OID: 3300009022
• Scaffold ID: Ga0103706_10000075
• Source Dataset Name: Eukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_S1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Woods Hole Oceanographic Institution
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5345
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Eukaryotic Communities From Seawater Of The North Pacific Subtropical Gyre

Source Dataset Sampling Location

• Location Name: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085090	Metatranscriptome	111	N
F094857	Metatranscriptome	105	N
F104391	Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103706_100000752	F085090	AGGAG	VVCQDLLGWLASLDQLASLDHLVYRAALERLDHRDSLEPRATVVSLAFRVFLDPLDLKDRRDLLVKMERMESQVQWVGAVLQDLMDPLVVWATLVNQDQEDHQARKAREVHLASLVLLGLLALQARAMEWTWLL*
Ga0103706_100000753	F094857	GGA	VKLADRDLLERPGCPVKRALMDQEDPQAKEDHRDLKACQAWKAVREPLVLMDLMDRLDHLDQMDLLGIEEFLVYQVLLAQLELQANKDHKEKGEILASQESRALRDHLGLLVLLGLLEREVSGVRRVHQESRELQGWAVDLVTRVHLVQQE*
Ga0103706_100000755	F104391	N/A	MKENGDQQASLGKGECPVNLDPLDPEVRMVLKGQMVNLDHLDPRDLLDTKVPLGWLVYLVSAEFQGLKVLRGEEVIQAFLDQLALMAEQARGVNKALLVLQDPLARLEVLEIQDRQGLLENRDQLV*