Scaffold Ga0066710_100657685

Overview

Basic Information

• Taxon OID: 3300009012
• Scaffold ID: Ga0066710_100657685
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1595
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000792	Metagenome / Metatranscriptome	890	Y
F002887	Metagenome / Metatranscriptome	523	Y
F022254	Metagenome / Metatranscriptome	215	Y
F023076	Metagenome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066710_1006576851	F022254	GGA	MTKTNPSKRVMRNRRTLPSRQRTYRQLYVRVDRLEDAISHFYKVINELRR
Ga0066710_1006576852	F023076	AGGGGG	VTSRAEQYRRYARQCLEIAPAFRDEEARATLLGLAQAWLRLTHLALANRQIAELAVQVARQREIVKHGFDTGQRSEMAESLLHALEESLGAFEKHRIFLLSCQRVIQRPPLLSDAVTGRSLSGRNGRGAS
Ga0066710_1006576853	F000792	AGG	MREHALLFCLLGLVLTATIILVIAPGAVTWALALIE
Ga0066710_1006576854	F002887	GAGG	MAPKPARFVFAVGMALTILAAMTSAKVEPSPLIYPVYQPQLLLLY