Scaffold Ga0066710_100475412

Overview

Basic Information

• Taxon OID: 3300009012
• Scaffold ID: Ga0066710_100475412
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1879
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003623	Metagenome / Metatranscriptome	476	Y
F011575	Metagenome / Metatranscriptome	289	Y
F016508	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066710_1004754121	F016508	GGAGG	MNAETETAIQNLGKAFADTADTMKRIANSLVNIELHLQAMRPSGVQTVRGPAR
Ga0066710_1004754123	F011575	AGGAGG	MDGLIQIQVVVQANAGAVGVMGLDTQGRVWYGELSGAPSPARYAIKWTRIEEKEK
Ga0066710_1004754125	F003623	N/A	LTGLCFEDNDARIVLVFVRLRSLLFALCPDHPVALCGTCRRTYTPEQLGTELGDRCYLCRDCGADLRESVVAHARTCPNLIPQKPLARMGSVTKSTIPPAVSERFEARRRARLGLDAPAAAR