NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_100475412

Scaffold Ga0066710_100475412


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_100475412 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1879
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003623Metagenome / Metatranscriptome476Y
F011575Metagenome / Metatranscriptome289Y
F016508Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1004754121F016508GGAGGMNAETETAIQNLGKAFADTADTMKRIANSLVNIELHLQAMRPSGVQTVRGPAR
Ga0066710_1004754123F011575AGGAGGMDGLIQIQVVVQANAGAVGVMGLDTQGRVWYGELSGAPSPARYAIKWTRIEEKEK
Ga0066710_1004754125F003623N/ALTGLCFEDNDARIVLVFVRLRSLLFALCPDHPVALCGTCRRTYTPEQLGTELGDRCYLCRDCGADLRESVVAHARTCPNLIPQKPLARMGSVTKSTIPPAVSERFEARRRARLGLDAPAAAR

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