Scaffold Ga0066710_100361868

Overview

Basic Information

• Taxon OID: 3300009012
• Scaffold ID: Ga0066710_100361868
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2149
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001875	Metagenome / Metatranscriptome	623	Y
F026513	Metagenome / Metatranscriptome	197	Y
F077484	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066710_1003618683	F077484	AGGAG	MPEHWSFFHLTAARPVPSDDSPLATLTPDEFDACVVEGHPLFQALVETVNAYSETHPDLSLMACYIAADMLRELLKQDLRDAEADA
Ga0066710_1003618685	F001875	GGAG	MTEQNQARDLVATLRDALHQLESTLEHTRDGVDAIASQAERIRDSVAALGDLRQREDTSVGIEMFVDAAVDVLDAFRELESGILDVQAEVDTLAEEIADEESRDT
Ga0066710_1003618686	F026513	GGAGG	MLTPARKSPDERGQRWLQAEVQQLLADSGVALATPGPEDTPACYWGTGPETETTLYLRMAGDPEPKALHFPLTMIAQCGSGLYPAQHNAIMFIRRTLRKMGLLSA