NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_100347373

Scaffold Ga0066710_100347373


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_100347373 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2192
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015316Metagenome / Metatranscriptome255Y
F017980Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1003473731F015316N/AHHYLWVDSMALSDTVSITAVAPADTVRWVRFQPDGLQFRTNGAGWSALLYTSFKDCGVPTADTLRIAQVTDSLNIIRYLAPPDSTWIRVKKKAWSQANQYVAGVLHHFSQYAVSW
Ga0066710_1003473732F017980AGGMNSINRPHVRRWLIPLALLAGASAAASSCSDPSPVGVTTPPMLAAQKVGGGQLLSCPVAAYDSVTQVIGPAGGILVAGSHVLLVDSMALTSPVSITAVAPSQSVNLVRFRPEGLKFRPGVHGIGALVATNLDNCGVHPNQVLQIVHVDDSLSILGYLQSPTSTDSAVVVKYKTYLGSLWVGGLLHHFSNYAVAW

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