Scaffold Ga0066710_100252285

Overview

Basic Information

• Taxon OID: 3300009012
• Scaffold ID: Ga0066710_100252285
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2554
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000428	Metagenome / Metatranscriptome	1150	Y
F001404	Metagenome / Metatranscriptome	704	Y
F032968	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066710_1002522852	F000428	GGAGG	MRLEGHFESSSTLQRNERVKLAASFWNNVGAGMVIGGMAGAFFLDKPPGAWIKIGIAMAGLALGWLCYSIASNILTYMHATPEEHQ
Ga0066710_1002522854	F032968	AGG	MPSNKTATAAPFRRRNHSIDPAMKAGIGATACSVLILALVLLVMHTLPVSIG
Ga0066710_1002522855	F001404	GGAG	MCKISLIAVAAAVIATGFGVWAASTTNARVAPASGQGVEPFQLMMNAKELPTAEFADYTFVFR