Scaffold Ga0066710_100153011

Overview

Basic Information

• Taxon OID: 3300009012
• Scaffold ID: Ga0066710_100153011
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3211
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003846	Metagenome / Metatranscriptome	465	Y
F021333	Metagenome / Metatranscriptome	219	Y
F035832	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066710_1001530111	F003846	AGGAG	MTTTRRRRFPLSLSGLSIALALGLALWEWYFFFVVSTPPLENVAARLGFFTPNRLGFNLAWLVAVYLTYQLISIPFALPAAKGRFIGVVDGMASLVPLAVVLVVVFGKSYLLGTPERWETAILLLVVNVVD
Ga0066710_1001530112	F021333	AGGA	MYINRHHKHNALRRWKTLMRIQEAITKAIEGGYITDQLDDPSRLVQAQYFLETSFWEALARALGWEGDFEYIQLSSHEPSKMRQPMWLYYWHRFNHHLATGKTPESFFAAL
Ga0066710_1001530116	F035832	N/A	PTVLGPTTPSGYRLVLPEASQTVRSHPLALTVRVSDMAGKPVDEVLVHFRVPDAWASRAQVEPPTAATRQGQATTTFRARATGQLMVQITVEDRTVDIPITVVGETPRF