Scaffold Ga0105105_10360065

Overview

Basic Information

• Taxon OID: 3300009009
• Scaffold ID: Ga0105105_10360065
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 801
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0991
  • Long. (^o): -99.1044
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F031792	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105105_103600652	F031792	GGAGG	MGYEPELNDPVFYAGDYEEAVKCFICGDQLDPDDIVWANVEGQIVKEGNDTAWCVVCLPSEGENNE*
Ga0105105_103600653	F000821	AGGAG	MNEEYLQAKFNLCIDQAEKDLKEQDIANAIKNLQRANSAMSRLFGLEEDGE*
Ga0105105_103600654	F001477	AGGAGG	VSNVYTIHPPKSDLILFYEIVEPNTGIRWGGGDVKSAMQWLYLAPIGSRLLVSAWDSDEEDAHLVGQTIDITEIIQQAREVGL*