NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103710_10038501

Scaffold Ga0103710_10038501


Overview

Basic Information
Taxon OID3300009006 Open in IMG/M
Scaffold IDGa0103710_10038501 Open in IMG/M
Source Dataset NameEukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_E2
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterWoods Hole Oceanographic Institution
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1060
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Eukaryotic Communities From Seawater Of The North Pacific Subtropical Gyre

Source Dataset Sampling Location
Location NameNorth Pacific Subtropical Gyre
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043963Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0103710_100385011F043963N/AMASQEPLLQKPTAAAKRAKLSVMYGADEYLEELKRKYEVDHEIASLKAIMPDQGDPNAGKAQESKDKMLQIEKNDANRSKKTGRLFPTPNKPDPMPPELAFLFTKITPEQMMYMWNILTLIFVSQCLMVVAYCAALACFPDHWWTCTVAFGVPFAYIAIQNIYIDHDVMHGATFPPYDWQEYITHPFSDFFSLPWKEFVLEHNRHHASTVDLLQQGEFGWDPEEFQYWLLEWTWRRGKYPFPIHPFGLVLTGAALPFIHFFGLNDTGGLFALEWYCHFPDEGTGGKCNKDFYKKWLPRRIKHTCFLWTLWACVWLGGAGAL

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