Basic Information | |
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Taxon OID | 3300009006 Open in IMG/M |
Scaffold ID | Ga0103710_10033654 Open in IMG/M |
Source Dataset Name | Eukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_E2 |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Woods Hole Oceanographic Institution |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1117 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Eukaryotic Communities From Seawater Of The North Pacific Subtropical Gyre |
Source Dataset Sampling Location | ||||||||
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Location Name | North Pacific Subtropical Gyre | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002829 | Metagenome / Metatranscriptome | 527 | Y |
F013304 | Metagenome / Metatranscriptome | 272 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0103710_100336541 | F002829 | N/A | MKKCDTLVKEWQLLDNTVTELNSWVAQDRGAEGEQNFSLEKMESTLGELKNIFKEKEKLVENL* |
Ga0103710_100336542 | F013304 | AGG | LEVVGRFKEKVDKIDEFVPSLKEFDVTLKDIDKWMKDAENQLGEIKNASDKMTPEDRVSYTMELQEDVAAKVIIIQKSIDAEGELLPQGEKVPQDAQDYKDELKRIKDFVDNLYQKVMKECDNFSEDVKYWAEYKTGIKEFKPWLAEAEKKSTEGLAKPQTLDEANAMFATVKTFEGSCHKHFKVLEDAASAANRMTTQRG* |
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