Scaffold Ga0103710_10011504

Overview

Basic Information

• Taxon OID: 3300009006
• Scaffold ID: Ga0103710_10011504
• Source Dataset Name: Eukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_E2
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Woods Hole Oceanographic Institution
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1671
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Eukaryotic Communities From Seawater Of The North Pacific Subtropical Gyre

Source Dataset Sampling Location

• Location Name: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058162	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103710_100115041	F058162	N/A	ASLHRRKVASQLWRLVRTTMVVIRVGFICGKDTDFVEHPGKGPRYASIGDASFLSDLPDKWRVDPNSKEYLMDCEPGTKGQAHCDVALAWYIKKNYQDIEVDIITPEELTVKRLHSNDLNFTMGYNAVNIKVENNASGAAKMRAFTKAKNIYPTWEAEEYILHKSKYMQACMDAGVPMAPTIFAIKGKRSPAQLMAQIKERGWKTFVMKQSESGFSLGFCKMTVEQCDNDPSILATYFKDWSHCPEFIVQEAVEGFTRNWETRCFWFNGKFLYAIANMAAVSAKDSKERIVTGNDIPKEFLENAKRIGQQAIRVLPELQTGGAPVKNVLVRTDVGCSDSQLHDKYTNWDPSKRTFFLNEIEPSSTTYFVRWLKFDCIPMYAKLYVEKAREIYKATKGEQIRKVPTPARSTPVKGKTKPPVSTPVKAKTKVAVSAKVLKTGKLKAKK*