Scaffold Ga0102963_1024281

Overview

Basic Information

• Taxon OID: 3300009001
• Scaffold ID: Ga0102963_1024281
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2545
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4973
  • Long. (^o): -122.1295
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004603	Metagenome	431	Y
F027830	Metagenome / Metatranscriptome	193	N
F062678	Metagenome	130	N
F105890	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102963_102428110	F027830	AGGAG	MNNMTFNTAFGKYSAHYRDQGFGGELPYISETYSRATGEGGYLLRDENDRHIAYITKEGKVQA*
Ga0102963_10242817	F062678	AGGCGG	MTQQDQNALKKLKRKYPGLPVVGGPKDWERIEKMLSKKDLELYKLITKRGQD*
Ga0102963_10242818	F105890	AGGGGG	MTILIHKTEALKLAYKVNKLTVEELWDFVDELKKLEDVANTTGQGNFNFSAVKQRIAFNEYKED*
Ga0102963_10242819	F004603	AGGA	MIFSININGNIVDWCYNLDCQDKQYHKTWIPKSRDIQIITKDLNGLTVSEVKKIILEDIQPDITMVKEHNNKLARARRVNQ*