Scaffold Ga0102963_1018341

Overview

Basic Information

• Taxon OID: 3300009001
• Scaffold ID: Ga0102963_1018341
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2954
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4973
  • Long. (^o): -122.1295
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004603	Metagenome	431	Y
F015990	Metagenome	250	N
F027830	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102963_10183412	F004603	AGGA	MIFSINIKGNIVDWCYNLDCQEKQYYKTWIPKLRDIQIITKDLNGLTISEVKKIILEDIQPDITMVKEHNNKLARARRVNQ*
Ga0102963_10183413	F027830	AGGAG	MNKITFNTAFGKYSAHYRDQGFGGELPHISETHSKATGEGGYLLRDENNMHIAYISKDGKVEA*
Ga0102963_10183415	F015990	AGGAG	MTGKGSGRRKEDINKIRNNWDSIFKKRDKKQITKVIIEFEMPGNPSINDMNNHVEKMLKENKIVYKTITKYI*