Scaffold Ga0102963_1017546

Overview

Basic Information

• Taxon OID: 3300009001
• Scaffold ID: Ga0102963_1017546
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3023
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4973
  • Long. (^o): -122.1295
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F005537	Metagenome / Metatranscriptome	397	Y
F008307	Metagenome / Metatranscriptome	335	Y
F043149	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102963_10175462	F002495	AGGAGG	MSTNGNAKQKDWVLFPYKADDERALKIAFSGNVTLDNGNKGTILGVKGVSKDGKSKFVRIFAQVGVVFKGDDKFTGEMNYPDAGGQKGLIGWLNDEGTILSGYKNEPRPKQGKAQSKEIPF*
Ga0102963_10175464	F005537	AGG	MSDNVKFISELERLLNEKQSDYGHFDNTSFVMAGIMEKYLSVYNNKDIKVPLKFFGIFMVFLKLWRVMQSDNYKKDSFDDINGYAELLRRLVINDENSKR*
Ga0102963_10175466	F008307	AGCAG	MVKVVKKSDIEIAAEFEEIFDGATVEEATEKAHNQKMPSESAKFIITDTRFTKAKIKLIGGGENDGTK*
Ga0102963_10175467	F043149	GGAG	MALSNSNVRLYAKLDKAHKKIMGAKDGKGRQCVHTLQNFKEYNQLFRRIVEAENKDSLFLYT*