Scaffold Ga0102963_1002187

Overview

Basic Information

• Taxon OID: 3300009001
• Scaffold ID: Ga0102963_1002187
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8677
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4973
  • Long. (^o): -122.1295
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021540	Metagenome / Metatranscriptome	218	Y
F026571	Metagenome / Metatranscriptome	197	N
F104993	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102963_100218712	F104993	AGG	MEDDINDLLTQARDNISDNVGKHQEEQYIQVLNDSLVELVKLKNTTDDYIMIRNTAIERLYSECGYSAIKLGDIVGISRQMIHNIVKGK*
Ga0102963_10021876	F021540	GGAG	MKVIDKIYDCVNGDKYVVETKPCFHCKQTGQVEIFTQEMFYLNQGIHIQDAVKSLDKDYREQIITGTHPKCWIDMFGEEE*
Ga0102963_10021878	F026571	GAG	MKKYRVNVVGTKYVTTDTEDKAIEHTQDMLDHIHKSLNMQVFSIAEVKETK*